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SciKnowEngine/sciknowmap

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docker
docker
 
 
sciknowmap
sciknowmap
 
 
server_config
server_config
 
 
views
views
 
 
.gitignore
.gitignore
 
 
00_call_google_books_api.py
00_call_google_books_api.py
 
 
01_summarize_data.py
01_summarize_data.py
 
 
README.md
README.md
 
 
build_extended_corpus_from_pubmed_queries.py
build_extended_corpus_from_pubmed_queries.py
 
 
build_simple_topic_map.py
build_simple_topic_map.py
 
 
build_topic_evaluation_page.py
build_topic_evaluation_page.py
 
 
build_topic_map.py
build_topic_map.py
 
 
build_topic_map_for_vidz.py
build_topic_map_for_vidz.py
 
 
build_topic_model.py
build_topic_model.py
 
 
clean_corpus.py
clean_corpus.py
 
 
evaluate_topic_thresholds.py
evaluate_topic_thresholds.py
 
 
get_abstract_sentences_from_pmid_list.py
get_abstract_sentences_from_pmid_list.py
 
 
get_abstracts_from_pmid_list.py
get_abstracts_from_pmid_list.py
 
 
get_abstracts_from_pubmed.py
get_abstracts_from_pubmed.py
 
 
get_pmids_from_author_year_vol_page_spreadsheet.py
get_pmids_from_author_year_vol_page_spreadsheet.py
 
 
get_pmids_from_pubmed_query.py
get_pmids_from_pubmed_query.py
 
 
papers_that_are_cited_by_pmid.py
papers_that_are_cited_by_pmid.py
 
 
papers_that_are_similar_to_pmid.py
papers_that_are_similar_to_pmid.py
 
 
papers_that_cite_pmid.py
papers_that_cite_pmid.py
 
 
remove_documents_that_only_have_titles.py
remove_documents_that_only_have_titles.py
 
 
remove_duplicate_documents.py
remove_duplicate_documents.py
 
 
remove_non_english_documents.py
remove_non_english_documents.py
 
 
run_tsne_analysis.py
run_tsne_analysis.py
 
 
scholar.py
scholar.py
 
 
sciknowmap.py
sciknowmap.py
 
 
sciknowmap_evaluation_server.py
sciknowmap_evaluation_server.py
 
 
start_docker.sh
start_docker.sh
 
 

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The `SciKnowMap' project is concerned with developing an open source topic mapping tool that provides a way of drawing visualizations of data derived from scientific knowledge sources (such as bodies of literature). This work was initiated with studies of the organization of posters at the Society for Neuroscience Annual Meeting (see: http://f1000.com/posters/browse/summary/1092223) and studies of the organization of NIH funding (see http://dx.doi.org/10.1038/nmeth.1619).

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