Weight drop alert update

onprc_ehr/resources/queries/study/Demographics_NotInMMA.query.xml

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+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="Demographics_NotInMMA" tableDbType="NOT_IN_DB">
+                <tableTitle>Demographics (Excluding animals in Weight MMA regimen)</tableTitle>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/study/Demographics_NotInMMA.sql

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+/*
+ Created by Kollil in Dec 2025
+ Tkt # 13461
+ Added two filters to the Demographics dataset:
+ 1. Filter out any animal with the following SNOMED Codes:
+    Begin active weight management regimen (P-YY961)
+    However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
+    Release from active weight management regimen (P-YY960)
+ 2. Remove Shelters, Corral and Hospital locations from the lists
+  */
+
+SELECT
+    d.Id.curlocation.area AS Area,
+    d.Id.curlocation.room AS Room,
+    d.Id.curlocation.cage AS Cage,
+    d.Id,
+    d.Id.utilization.use AS ProjectsAndGroups,
+    d.species,
+    d.geographic_origin,
+    d.gender AS Sex,
+    d.calculated_status,
+    d.birth,
+    d.Id.Age.YearAndDays,
+    d.Id.MostRecentWeight.MostRecentWeight,
+    d.Id.MostRecentWeight.MostRecentWeightDate,
+    d.Id.viral_status.viralStatus,
+    d.history
+FROM Demographics d
+WHERE d.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital', 'Catch Area')-- Exclude animals from these locations
+  AND NOT (-- Exclude females under 5yrs, males under 7yrs
+    (d.gender.code = 'f' AND d.Id.age.ageInYears < 5)
+    OR (d.gender.code = 'm' AND d.Id.age.ageInYears < 7)
+    )
+  AND NOT EXISTS (
+    -- -- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
+    SELECT 1
+    FROM study.WeightMMA b
+    WHERE b.Id = d.Id
+      AND b.code = 'P-YY961'
+      AND b.date = (
+        SELECT MAX(b2.date)
+        FROM study.WeightMMA b2
+        WHERE b2.Id = d.Id
+          AND b2.code = 'P-YY961'
+    )
+      AND NOT EXISTS (
+        SELECT 1
+        FROM study.WeightMMA r
+        WHERE r.Id = d.Id
+          AND r.code = 'P-YY960'
+          AND r.date > b.date
+    )
+)
+

onprc_ehr/resources/queries/study/WeightMMA.query.xml

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+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="WeightMMA" tableDbType="NOT_IN_DB">
+                <tableTitle>Animals in weight management regimen</tableTitle>
+                <columns>
+                    <column columnName="Id">
+                        <isHidden>false</isHidden>
+                        <fk>
+                            <fkDbSchema>study</fkDbSchema>
+                            <fkTable>animal</fkTable>
+                            <fkColumnName>id</fkColumnName>
+                        </fk>
+                    </column>
+                    <column columnName="date">
+                        <isHidden>false</isHidden>
+                        <columnTitle>Prev Weight Date</columnTitle>
+                    </column>
+                    <column columnName="set_number">
+                        <columnTitle>Set Number</columnTitle>
+                    </column>
+                    <column columnName="code">
+                        <columnTitle>Snomed Code</columnTitle>
+                    </column>
+                    <column columnName="qualifier">
+                        <columnTitle>Qualifier</columnTitle>
+                    </column>
+                </columns>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/study/WeightMMA.sql

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+-- Created by Kolli, March 2026
+--New query created in the code base as the automated tests are failing.
+SELECT s.Id,
+       s.date,
+       s.set_number,
+       s.code,
+       s.qualifier
+FROM ehr.snomed_tags s
+where s.code like 'P-YY961'
+
+Union
+
+SELECT s.Id,
+       s.date,
+       s.set_number,
+       s.code,
+       s.qualifier
+FROM ehr.snomed_tags s
+where s.code like 'P-YY960'

onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.query.xml

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+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="weightRelChange_NotInMMA" tableDbType="NOT_IN_DB">
+                <tableTitle>Weight Change, Relative to Current Weight (Excluding the animals enrolled in MMA)</tableTitle>
+                <description>This query shows the percent change of each weight, relative to the current weight</description>
+                <columns>
+                    <column columnName="lsid">
+                        <isKeyField>true</isKeyField>
+                        <isHidden>true</isHidden>
+                    </column>
+                    <column columnName="Id">
+                        <isHidden>false</isHidden>
+                        <fk>
+                            <fkDbSchema>study</fkDbSchema>
+                            <fkTable>animal</fkTable>
+                            <fkColumnName>id</fkColumnName>
+                        </fk>
+                    </column>
+                    <column columnName="date">
+                        <isHidden>false</isHidden>
+                        <columnTitle>Prev Weight Date</columnTitle>
+                    </column>
+                    <column columnName="weight">
+                        <columnTitle>Prev Weight (kg)</columnTitle>
+                    </column>
+                    <column columnName="PctChange">
+                        <columnTitle>% Change Relative To Current</columnTitle>
+                    </column>
+                    <column columnName="AbsPctChange">
+                        <columnTitle>Abs Pct Change</columnTitle>
+                    </column>
+                </columns>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.sql

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+/*
+ Created by Kollil in Dec 2025
+ Tkt # 13461
+ Added two filters to the Demographics dataset:
+ 1. Filter out any animal with the following SNOMED Codes:
+    Begin active weight management regimen (P-YY961)
+    However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
+    Release from active weight management regimen (P-YY960)
+ 2. Remove Shelters, Corral and Hospital locations from the lists
+  */
+
+SELECT DISTINCT
+    l.lsid,
+    l.Id,
+
+    l.date AS LatestWeightDate,
+    l.weight AS LatestWeight,
+
+    p.date, -- AS PrevWeightDate
+    p.weight, -- AS PrevWeight
+
+    timestampdiff('SQL_TSI_DAY', p.date, l.date) AS IntervalInDays,
+    age_in_months(p.date, l.date) AS IntervalInMonths,
+
+    CASE
+        WHEN p.weight IS NOT NULL AND p.weight > 0 THEN
+            ROUND(((l.weight - p.weight) * 100 / p.weight), 1)
+        ELSE NULL
+        END AS PctChange,
+
+    CASE
+        WHEN p.weight IS NOT NULL AND p.weight > 0 THEN
+            ABS(ROUND(((l.weight - p.weight) * 100 / p.weight), 1))
+        ELSE NULL
+        END AS AbsPctChange,
+
+    l.qcstate AS LatestQcState,
+    p.qcstate AS PrevQcState
+
+FROM
+    (SELECT Id, MAX(date) AS LatestDate
+     FROM study.weight
+     GROUP BY Id) lw
+
+        JOIN study.weight l
+             ON l.Id = lw.Id
+                 AND l.date = lw.LatestDate
+
+        LEFT JOIN study.weight p
+                  ON p.Id = lw.Id
+                      AND p.date = (
+                          SELECT MAX(w2.date)
+                          FROM study.weight w2
+                          WHERE w2.Id = lw.Id
+                            AND w2.date <= timestampadd('SQL_TSI_DAY', -30, lw.LatestDate)
+                            AND w2.date >= timestampadd('SQL_TSI_DAY', -100, lw.LatestDate)
+                      )
+
+WHERE l.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital', 'Catch Area')-- Exclude animals from these locations
+  AND NOT (-- Exclude females under 5yrs, males under 7yrs
+    (l.Id.demographics.gender.code = 'f' AND l.Id.age.ageInYears < 5)
+        OR (l.Id.demographics.gender.code = 'm' AND l.Id.age.ageInYears < 7)
+    )
+  AND l.qcstate.publicdata = true
+  AND NOT EXISTS (
+    -- -- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
+    SELECT 1
+    FROM study.WeightMMA b
+    WHERE b.Id = l.Id
+      AND b.code = 'P-YY961'
+      AND b.date = (
+        SELECT MAX(b2.date)
+        FROM study.WeightMMA b2
+        WHERE b2.Id = l.Id
+          AND b2.code = 'P-YY961'
+    )
+      AND NOT EXISTS (
+        SELECT 1
+        FROM study.WeightMMA r
+        WHERE r.Id = l.Id
+          AND r.code = 'P-YY960'
+          AND r.date > b.date
+    )
+)
+