feat: Add pixel size estimation from registration#20
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Alpaca233 wants to merge 7 commits intoCephla-Lab:mainfrom
Open
feat: Add pixel size estimation from registration#20Alpaca233 wants to merge 7 commits intoCephla-Lab:mainfrom
Alpaca233 wants to merge 7 commits intoCephla-Lab:mainfrom
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Fix silent failure in PreviewWorker: log error instead of pass - Add bounds check for expected shifts in ratio calculation - Add sanity check before applying estimated pixel size (within 50%) - Remove unused self.estimated_pixel_size variable Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add docstring entries for registration_z and registration_t parameters - Fix type hints: z_level and time_idx now Optional[int] instead of int - Update read_zarr_tile and read_zarr_region to accept z_level and time_idx - Zarr reads now respect z-level and timepoint selection instead of hardcoding Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Extract duplicated arr[np.newaxis] to single return statement in read_zarr_region - Extract pixel size application logic to helper method _apply_estimated_pixel_size Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Summary
estimate_pixel_size()method to TileFusion that estimates true pixel size from registration resultsHow it works
For each registered tile pair:
Estimated pixel size = metadata_pixel_size × median(ratios)
Test plan
🤖 Generated with Claude Code