Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-analysis-framework-viz Public
Panel app for visualizing analysis results in AIND Analysis Framework
AllenNeuralDynamics/aind-analysis-framework-viz’s past year of commit activity - aind-ephys-cleanup Public
Tools for finding compressed raw ephys data uploaded to S3 corresponding to the original, uncompressed raw data files stored locally or on network drives, for checking the integrity of the uploaded data, and for identifying original files that can be safely deleted.
AllenNeuralDynamics/aind-ephys-cleanup’s past year of commit activity - aind-exaspim-data-transformation Public
A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.
AllenNeuralDynamics/aind-exaspim-data-transformation’s past year of commit activity
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